131001 MicrobeDB 調査中

食欲の秋ですね(*´ω｀*)　柿、芋、もみじ・・

現在、MicrobeDB調査中です。

ーーーーーー以下調査めもーーーーーー

＊検索例（トップページ）

・遺伝子から

gene,  MiGAP(DBCLSが提供する塩基配列解析サービス), Mapping, 

・系統から

Mapping, Strain,  taxonomy, 

・環境から

Emvironment,  SRS

・症状から

Disease

＊検索結果項目

Environment (ID、Label、Definition、Synonyms)

Strain (Number, Name, lsolated from, temperature, application, Related Taxonomy name by NCBI, sequence, DB link and text matching)

Gene (Name, Synonym, Products, Notes)

Taxonomy (ID, Label, Other Names)

Diseaseb (Name, Definition, Synonyms, Symptoms, Symptom Difinitions, Symptom Synonyms)

MiGAP(DBCLSが提供する塩基配列解析サービス) (???)

＊検索結果詳細

・Environment

ID:　MEO_0000029

Label: hot spring

Synonyms: spring, hot spring, hotspring, thermal feature, thermal spring

・Strain

Number: JCM 10602

Name: Bifidobacterium animalis subsp. lactis (Meile et al. 1997) Masco et al. 2004

Isolated From: Fermented milk

Temperature: 37

Application: 

Related Taxonomy name by NCBI: Bifidobacterium animalis subsp. lactis

Related Taxonomy name by sequence : 

Related Taxonomy name by DB link: 

Related Taxonomy name by text matching: Bifidobacterium animalis subsp. lactis

・Gene

Name : psbA-1

Synonym: 

Products: photosystem II protein D1

Notes: identified by match to protein family HMM...More

・Toxonomy

ID：1351

Label: Enterococcus faecalis

Other Names: Streptococcus glycerinaceus, ATCC 19433-U, "Micrococcus zymogenes" MacCallum and Hastings 1899, HAMBI 1711, "Streptococcus glycerinaceus" Orla-Jensen 1919, ATCC 19433, NCAIM B.01312, Enterocoque, "Enterocoque" Thiercelin 1902, JCM 5803, NBRC 100480, Enterococcus faecalis, NCIMB 775, Micrococcus zymogenes, Streptococcus faecalis Andrewes and Horder 1906 (Approved Lists 1980), CIP 103015, Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Balz 1984, Streptococcus liquefaciens, LMG 7937, Enterococcus feacalis, NCDO 581, Micrococcus ovalis, "Streptococcus liquefaciens" Sternberg 1892, CCUG 19916, NCTC 775, Streptococcus faecalis, "Enterococcus proteiformis" Thiercelin and Jouhaud 1903, DSM 20478, "Micrococcus ovalis" Escherich 1886, JCM 8726, NBRC 100481, Enterococcus proteiformis

MiGAPにいて

・togotv　http://togotv.dbcls.jp/20100624.html

などなど。。

＊EnvironmentのIDのリンクから飛んでみた。

Definition, 

MEO Hierarchy, 

Ortholog Abundance in Environment,  

Meta16S Sample List, 

Taxonomic Compositon of Meta16S,

 Metagenome Sample List, 

Sequenced Genome List, 

Taxonomic Composition of Genomes,

 Strain List, MEO Ontology View, 

＊以降、各項目は次回調査・・・

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