nimnim's blog @統合牧場

おもにライフサイエンスデータベース統合TVのめも日記です。BioやScienceに興味がある小学生〜大人の方までどうぞご覧ください。 普段は細菌とたわむれています。(・▽・)。【分子細菌学/togotv/サイエンスデータベース】統合牧場から放牧中です。

131001 MicrobeDB 調査中

食欲の秋ですね(*´ω`*) 柿、芋、もみじ・・








gene,  MiGAP(DBCLSが提供する塩基配列解析サービス), Mapping, 


Mapping, Strain,  taxonomy, 


Emvironment,  SRS





Environment (ID、Label、Definition、Synonyms)

Strain (Number, Name, lsolated from, temperature, application, Related Taxonomy name by NCBI, sequence, DB link and text matching)

Gene (Name, Synonym, Products, Notes)

Taxonomy (ID, Label, Other Names)

Diseaseb (Name, Definition, Synonyms, Symptoms, Symptom Difinitions, Symptom Synonyms)

MiGAP(DBCLSが提供する塩基配列解析サービス) (???)




ID: MEO_0000029

Label: hot spring

Synonyms: spring, hot spring, hotspring, thermal feature, thermal spring



Number: JCM 10602

Name: Bifidobacterium animalis subsp. lactis (Meile et al. 1997) Masco et al. 2004

Isolated From: Fermented milk

Temperature: 37


Related Taxonomy name by NCBI: Bifidobacterium animalis subsp. lactis

Related Taxonomy name by sequence : 

Related Taxonomy name by DB link: 

Related Taxonomy name by text matching: Bifidobacterium animalis subsp. lactis



Name : psbA-1


Products: photosystem II protein D1

Notes: identified by match to protein family HMM...More




Label: Enterococcus faecalis

Other Names: Streptococcus glycerinaceus, ATCC 19433-U, "Micrococcus zymogenes" MacCallum and Hastings 1899, HAMBI 1711, "Streptococcus glycerinaceus" Orla-Jensen 1919, ATCC 19433, NCAIM B.01312, Enterocoque, "Enterocoque" Thiercelin 1902, JCM 5803, NBRC 100480, Enterococcus faecalis, NCIMB 775, Micrococcus zymogenes, Streptococcus faecalis Andrewes and Horder 1906 (Approved Lists 1980), CIP 103015, Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Balz 1984, Streptococcus liquefaciens, LMG 7937, Enterococcus feacalis, NCDO 581, Micrococcus ovalis, "Streptococcus liquefaciens" Sternberg 1892, CCUG 19916, NCTC 775, Streptococcus faecalis, "Enterococcus proteiformis" Thiercelin and Jouhaud 1903, DSM 20478, "Micrococcus ovalis" Escherich 1886, JCM 8726, NBRC 100481, Enterococcus proteiformis










MEO Hierarchy, 

Ortholog Abundance in Environment,  

Meta16S Sample List, 

Taxonomic Compositon of Meta16S,

 Metagenome Sample List, 

Sequenced Genome List, 

Taxonomic Composition of Genomes,

 Strain List, MEO Ontology View,